mzR Error (different Version)
1
0
Entering edit mode
@martagarciapalacin-18288
Last seen 5.9 years ago

Hi everyone,

I am trying to install Metab package (of Bioconductor) in R.3.5.1, but I am getting this error:

 

Attaching package: ‘xcms’

The following object is masked from ‘package:stats’:

    sigma

Loading required package: svDialogs

Warning message:

In fun(libname, pkgname) :

  mzR has been built against a different Rcpp version (0.12.19)

than is installed on your system (1.0.0). This might lead to errors

when loading mzR. If you encounter such issues, please send a report,

including the output of sessionInfo() to the Bioc support forum at 

https://support.bioconductor.org/. For details see also

https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue.

Output of sessionInfo():

> sessionInfo(package = NULL)

R version 3.5.1 (2018-07-02)

Platform: x86_64-w64-mingw32/x64 (64-bit)

Running under: Windows >= 8 x64 (build 9200)

Matrix products: default

locale:

[1] LC_COLLATE=Spanish_Spain.1252  LC_CTYPE=Spanish_Spain.1252   

[3] LC_MONETARY=Spanish_Spain.1252 LC_NUMERIC=C                  

[5] LC_TIME=Spanish_Spain.1252    

attached base packages:

[1] stats4    parallel  stats     graphics  grDevices utils     datasets  methods  

[9] base     

other attached packages:

 [1] Metab_1.16.0        svDialogs_1.0.0     xcms_3.4.0          MSnbase_2.8.0      

 [5] ProtGenerics_1.14.0 S4Vectors_0.20.1    mzR_2.16.0          BiocParallel_1.16.0

 [9] Biobase_2.42.0      BiocGenerics_0.28.0 Rcpp_1.0.0         

loaded via a namespace (and not attached):

 [1] RColorBrewer_1.1-2     DEoptimR_1.0-8         pillar_1.3.0          

 [4] compiler_3.5.1         BiocManager_1.30.3     plyr_1.8.4            

 [7] iterators_1.0.10       tools_3.5.1            zlibbioc_1.28.0       

[10] digest_0.6.18          ncdf4_1.16             MALDIquant_1.18       

[13] tibble_1.4.2           preprocessCore_1.44.0  gtable_0.2.0          

[16] lattice_0.20-38        rlang_0.3.0.1          foreach_1.4.4         

[19] Matrix_1.2-15          svGUI_1.0.0            rstudioapi_0.8        

[22] IRanges_2.16.0         multtest_2.38.0        grid_3.5.1            

[25] robustbase_0.93-3      impute_1.56.0          survival_2.43-1       

[28] XML_3.98-1.16          RANN_2.6               limma_3.38.2          

[31] pander_0.6.3           ggplot2_3.1.0          splines_3.5.1         

[34] scales_1.0.0           pcaMethods_1.74.0      codetools_0.2-15      

[37] MASS_7.3-51.1          MassSpecWavelet_1.48.0 mzID_1.20.0           

[40] colorspace_1.3-2       affy_1.60.0            doParallel_1.0.14     

[43] lazyeval_0.2.1         munsell_0.5.0          vsn_3.50.0            

[46] crayon_1.3.4           affyio_1.52.0  

 

Many thanks in advance,

Marta

mzr metab • 1.5k views
ADD COMMENT
0
Entering edit mode
@laurent-gatto-5645
Last seen 1 day ago
Belgium
It's not an error, it's only a warning and you can safely ignore it. It tells you that mzR was built with a different Rcpp version than is installed on your system. This used to be a problem, but now that Rcpp is stable, it's become irrelevant.
ADD COMMENT

Login before adding your answer.

Traffic: 842 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6