Question: Error while loading the data structrure in the ballgown tool
gravatar for Mithil Gaikwad
4 months ago by
Tezpur University, India
Mithil Gaikwad0 wrote:

Hello, I am facing an error while loading my data structure in ballgown tool,  I have triedfollowing are the commands which i am using in my data:

>pheno_data = read.csv(file ="design_matrix", header = TRUE, sep = ",")
>sample_full_path <- paste("SRRXXX", "SRRYYY", "SRRZZZ",pheno_data[,1], sep = ',')

#SRRXXX, SRRYYY are my ballgown folders containing respective SRRXXX.gtf and SRRYYY.gtf files

>bg = ballgown(samples=as.vector(sample_full_path),pData=pheno_data)

Tue Nov 13 13:13:27 2018
Error in ballgown(samples = as.vector(sample_full_path), pData = pheno_data) :

Something is wrong: are you missing .ctab files? Do extra files/folders (other than tablemaker output folders) match your samples/dataDir/samplePattern argument(s)?

ADD COMMENTlink written 4 months ago by Mithil Gaikwad0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 329 users visited in the last hour