When running DEXSeqHTML, I got the following error:
Fatal error: An undefined error occured, please check your input carefully and contact your administrator. converting counts to integer mode Warning message: In DESeqDataSet(rse, design, ignoreRank = TRUE) : some variables in design formula are characters, converting to factors using supplied model matrix using supplied model matrix using supplied model matrix Error in getListElement(x, i, ...) : GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment Calls: DEXSeqHTML ... tryCatch -> tryCatchList -> tryCatchOne ->
This was run using the Galaxy wrapper. However, the error appears to be coming from the DEXSeqHTML function and I can't quite tell where in that function it's failing. Another user on Biostars ran into the same error. Any help tracking down the source of the problme would be much appreciated.