I have updated my R software to 3.5.1. I am trying to install 'RBGL' package and had problems installing it.
Previously I was using R.3.4.4 and had no problems with 'RBGL ' installation
Can anyone help me in pointing out, what the error message corresponds to?
And here is gcc version details: gcc version 4.4.7 20120313 (Red Hat 4.4.7-23) (GCC)
BiocManager::install("RBGL", version = "3.8",lib.loc="/opt/R/lib") Bioconductor version 3.8 (BiocManager 1.30.4), R 3.5.1 (2018-07-02) Installing package(s) 'RBGL' trying URL 'https://bioconductor.org/packages/3.8/bioc/src/contrib/RBGL_1.58.0.tar.gz' Content type 'application/x-gzip' length 6475754 bytes (6.2 MB) ================================================== downloaded 6.2 MB * installing *source* package ‘RBGL’ ... found rbgl_trimmed_boost_1_61_0 header sources and tar archive;\n using what is there. ** libs g++ -m64 -I"/usr/include/R" -DNDEBUG -Irbgl_trimmed_boost_1_61_0 -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c bbc.cpp -o bbc.o bbc.cpp: In function ‘SEXPREC* BGL_brandes_betweenness_centrality(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)’: bbc.cpp:38: error: ‘allocVector’ was not declared in this scope bbc.cpp: In function ‘SEXPREC* BGL_betweenness_centrality_clustering(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)’: bbc.cpp:128: error: ‘allocVector’ was not declared in this scope make: *** [bbc.o] Error 1 ERROR: compilation failed for package ‘RBGL’ * removing ‘/opt/R/lib/RBGL’ The downloaded source packages are in ‘/tmp/Rtmp4PWGJj/downloaded_packages’ Update old packages: 'mclust' Update all/some/none? [a/s/n]: n Warning message: In install.packages(pkgs = doing, lib = lib, repos = repos, ...) : installation of package ‘RBGL’ had non-zero exit status