alpha in lfcshrink?
Last seen 11 weeks ago
In DESeq2, we can optimize the independent filtering step in calculating the results by changing alpha. Is there a way to perform that as well for lfcshrink?
Last seen 1 day ago
The way we wrote it, the extra arguments for lfcShrink() are passed to the shrinkage methods, but if you want to specify arguments to results(), you can just pass the results table yourself:
res <- results(dds, ...)
res <- lfcShrink(dds, res=res, ...)
This way you have controlled the generation of the results table.
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