Question: EPIC methylation array - analysis with ChAMP - how to export bed/wig file to view in UCSC/IGV?
0
gravatar for DonnyB
6 months ago by
DonnyB0
UK
DonnyB0 wrote:

Hi,

I have analysed some Infinium EPIC array, methylation data using ChAMP. I'd like to export the beta values as bed/wig/whatever to view in UCSC/IGV along side some RNAseq data. Is there an off the shelf function to do this (because I can't find one) or am I stuck with writing my own?

Cheers,

 

champ methylation epic • 149 views
ADD COMMENTlink modified 6 months ago by Yuan Tian90 • written 6 months ago by DonnyB0
Answer: EPIC methylation array - analysis with ChAMP - how to export bed/wig file to vie
0
gravatar for Yuan Tian
6 months ago by
Yuan Tian90
University College London
Yuan Tian90 wrote:

Hello:

Sorry that ChAMP cannot export any bed/wig files for IGV visualization. I may consider to include these functionality in future version.

Best

Yuan Tian

ADD COMMENTlink written 6 months ago by Yuan Tian90
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