EPIC methylation array - analysis with ChAMP - how to export bed/wig file to view in UCSC/IGV?
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D • 0
@d-16116
Last seen 3 months ago
UK

Hi,

I have analysed some Infinium EPIC array, methylation data using ChAMP. I'd like to export the beta values as bed/wig/whatever to view in UCSC/IGV along side some RNAseq data. Is there an off the shelf function to do this (because I can't find one) or am I stuck with writing my own?

Cheers,

 

methylation epic champ • 465 views
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Yuan Tian ▴ 240
@yuan-tian-13904
Last seen 7 days ago
United Kingdom

Hello:

Sorry that ChAMP cannot export any bed/wig files for IGV visualization. I may consider to include these functionality in future version.

Best

Yuan Tian

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