annotatr: CpG Island/Shore/Shelf IDs
1
0
Entering edit mode
sorjuelal • 0
@sorjuelal-18470
Last seen 2.8 years ago

Hi,

I was wondering if there's a straightforward way of finding the ID of the CpG Island from a particular Shore/Shelf ID. Since the ID of the shore is different from that of its corresponding island. I figured the numbering is something like:

shores shore:1 and shore:2, belong to island:1, and for example shores shore:13 and shore:14, belong to island:7...and so on

So maybe island.id <- shore.id - floorshore.id/2?

I think this stops working at some point. Anyway, is there an easier way of getting the island IDs from the shore IDs?

Thanks,

Stephany

 

annotatr • 963 views
ADD COMMENT
1
Entering edit mode
rcavalca ▴ 140
@rcavalca-7718
Last seen 4.0 years ago
United States

Hi Stephany,

Thanks for this suggestion. I think this is a good idea, but I'll need to spend some time thinking about how to do this because there are cases (I'm fairly sure) where islands may be close to each other and so they could potentially share a shore or shelf.

Nevertheless, I'll put this in my to do list for the Bioconductor 3.9 release.

ADD COMMENT

Login before adding your answer.

Traffic: 531 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6