Error: 'biocValid' is not an exported object from 'namespace:BiocManager'
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mariatuffy • 0
@mariatuffy-18585
Last seen 2.8 years ago

Hello

Could you please let me know whether biocValid package has been replaced by something else? When I try to install (R version 3.5.1) I get this error:

BiocManager::biocValid()
Error: 'biocValid' is not an exported object from 'namespace:BiocManager'

When I look for biocValid using the command below it does not return any results indicating that is not available. 

BiocManager::available("biocValid")
character(0)

Many thanks for your help.

 

biocmanager • 847 views
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shepherl 2.8k
@lshep
Last seen 11 hours ago
United States

BiocManager::valid() will be the same as BiocInstaller::BiocValid()

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Hello

Thanks for your reply.

BiocInstaller::biocValid() returns [1] TRUE which means that it is available but when I try to install it using:

BiocManager::install("biocValid") I get: 

Bioconductor version 3.8 (BiocManager 1.30.4), R 3.5.1 (2018-07-02)
Installing package(s) 'biocValid'
Warning message:
package ‘biocValid’ is not available (for R version 3.5.1) 

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biocValid() was a function in BiocInstaller which is deprecated. BiocManager has the function valid() to use. Please run BiocManager::valid() in place of running BiocInstaller::biocValid()

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Hello  - Thanks very much  - that worked !

 

 

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