Entering edit mode
mariatuffy
•
0
@mariatuffy-18585
Last seen 5.4 years ago
Hello
Could you please let me know whether biocValid package has been replaced by something else? When I try to install (R version 3.5.1) I get this error:
BiocManager::biocValid()
Error: 'biocValid' is not an exported object from 'namespace:BiocManager'
When I look for biocValid using the command below it does not return any results indicating that is not available.
BiocManager::available("biocValid")
character(0)
Many thanks for your help.
Hello
Thanks for your reply.
BiocInstaller::biocValid() returns [1] TRUE which means that it is available but when I try to install it using:
BiocManager::install("biocValid") I get:
Bioconductor version 3.8 (BiocManager 1.30.4), R 3.5.1 (2018-07-02)
Installing package(s) 'biocValid'
Warning message:
package ‘biocValid’ is not available (for R version 3.5.1)
biocValid()
was a function inBiocInstaller
which is deprecated.BiocManager
has the functionvalid()
to use. Please runBiocManager::valid()
in place of runningBiocInstaller::biocValid()
Hello - Thanks very much - that worked !