Question: Add TRF in mouse BSgenome
0
gravatar for fusion.slope
3 months ago by
fusion.slope0 wrote:

Hello,

 

I am wondering if there is any way to add the TRF mask of the tandom repeat regions in the mouse mm10 BSgenome object. Is there a way to do that?

 

​Thanks in advance

ADD COMMENTlink modified 3 months ago by shepherl ♦♦ 1.2k • written 3 months ago by fusion.slope0
Answer: Add TRF in mouse BSgenome
1
gravatar for shepherl
3 months ago by
shepherl ♦♦ 1.2k
United States
shepherl ♦♦ 1.2k wrote:

There are two different BSgenome packages for mm10, BSgenome.Mmusculus.UCSC.mm10.masked and BSgenome.Mmusculus.UCSC.mm10. Doesn't the BSgenome.Mmusculus.UCSC.mm10.masked have the information you are looking for?

ADD COMMENTlink modified 3 months ago • written 3 months ago by shepherl ♦♦ 1.2k
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