Question: Add TRF in mouse BSgenome
0
gravatar for fusion.slope
7 weeks ago by
fusion.slope0 wrote:

Hello,

 

I am wondering if there is any way to add the TRF mask of the tandom repeat regions in the mouse mm10 BSgenome object. Is there a way to do that?

 

​Thanks in advance

ADD COMMENTlink modified 5 weeks ago by shepherl ♦♦ 1.1k • written 7 weeks ago by fusion.slope0
Answer: Add TRF in mouse BSgenome
1
gravatar for shepherl
5 weeks ago by
shepherl ♦♦ 1.1k
United States
shepherl ♦♦ 1.1k wrote:

There are two different BSgenome packages for mm10, BSgenome.Mmusculus.UCSC.mm10.masked and BSgenome.Mmusculus.UCSC.mm10. Doesn't the BSgenome.Mmusculus.UCSC.mm10.masked have the information you are looking for?

ADD COMMENTlink modified 5 weeks ago • written 5 weeks ago by shepherl ♦♦ 1.1k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 329 users visited in the last hour