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Question: ggbio won't plot ideogram in R version 3.3.1, ggplot2 version 3.1.0
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gravatar for t.fadason
12 days ago by
t.fadason10
t.fadason10 wrote:

I keep getting this error with autoplot (or plotIdeogram) in ggbio.

Error in rep(startY, each = length(yy)) : 
  attempt to replicate an object of type 'language'

Wondering if it has to do with the ggplot2 (3.1.0) as suggested by this issue. Following is a sample of my code:

library(ggbio)
library(biovizBase)
data(hg19IdeogramCyto)
plotIdeogram("hg19")
ggbio::plotIdeogram(hg19IdeogramCyto)

Does anyone know a fix to this? 

Thank you

 

 

ADD COMMENTlink written 12 days ago by t.fadason10

I had the same error, but in R version 3.4.4.

ADD REPLYlink written 11 days ago by fshodan0

Unfortunately ggbio is only supported on R 3.5.
 

ADD REPLYlink written 11 days ago by Michael Lawrence10k
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