ReportingTools: Error using packet 1 arguments must have same length
0
0
Entering edit mode
mmokrejs • 0
@mmokrejs-16289
Last seen 2.7 years ago
Hi, I have some output from DESeq2 to be processed by ReportingTools. In thread C: DESeq2: Error using packet 1 arguments must have same length it turned out it is a ReportigTools issue. Would you please comment on this error, visible only in rendered figures?
library(ReportingTools)
desReport <- HTMLReport(shortName = "RNAseq_analysis_with_DESeq",
                        title = "Results of differential expression analysis using DESeq2 (cancer vs. normal)",
                        reportDirectory = "./reports")
publish(res, desReport, DataSet = dds, n = 50, pvalueCutoff = 0.01, lfc = 1,
        make.plots = TRUE, factor = dds$dex)
finish(desReport)
Thank you,
reportingtools • 525 views
ADD COMMENT
0
Entering edit mode

Hi,

I had the same error. I think the error is caused by the lattice package. I could fix this, by setting factor (which I hadn't done before). This might indicate that something is wrong with the value of factor.

HTH, Christoph

ADD REPLY

Login before adding your answer.

Traffic: 179 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6