Hi..I tried to use ChAMP for my EPIC methylation array data and I use the following commands but it's not working,
if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("ChAMP", version = "3.8")
BiocManager::install("ChAMPdata", version = "3.8")
baseDir2 <- "C:/Users/sinha.puja/Desktop/idats"
myLoad <- champ.load("C:/Users/sinha.puja/Desktop/baseDir2")
It gives me error: Error in champ.load("C:/Users/sinha.puja/Desktop/baseDir2") :
could not find function "champ.load"
I tried very hard by uninstalling and the re-installing the same but every time I am stuck at the same step. Has anyone else experienced this, or has any idea what I can do to solve this problem, as I seem to be going round in circles, which is incredibly frustrating!
Thank you in advance for your suggestions!