GDC RNA seq files (replicates?)
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coyoung ▴ 10
@coyoung-17963
Last seen 16 months ago

Hello,

I have downloaded some data from TCGA. Some of the participants in the project TCGA-LUAD have multiple BAM files for RNA-Seq. Are these technical replicates? How can I figure out what these files are or can I used them all in a differential expression analysis? The left column is file name and the right column is the abbreviated case ID from the GDC browser.

 

9f809399.b8bf.4a21.a703.14464e6594eb_gdc_realn_rehead.bam MPT TCGA.44.5645
af2719bb.3eb8.4d96.add9.3f44ca91e6ae_gdc_realn_rehead.bam MPT TCGA.44.5645
e66bf758.e262.41f7.8493.7b0e1816fd7d_gdc_realn_rehead.bam MPT TCGA.44.5645
233446a9.2cbf.4395.9fb4.0660276d9885_gdc_realn_rehead.bam MPT TCGA.44.6146
4585dd6a.7829.4919.8b36.25d94983144c_gdc_realn_rehead.bam MPT TCGA.44.6146
d04d83a4.fbe1.4b6a.a48d.2950394a67bb_gdc_realn_rehead.bam MPT TCGA.44.6146
3efc7114.c5a2.4bb6.b6bf.02fafc3573f6_gdc_realn_rehead.bam MPT TCGA.44.2665
61274c16.dddd.4df9.815a.52bc8fdc2462_gdc_realn_rehead.bam MPT TCGA.44.2665
4d8bf6c2.5bfa.4ac3.945b.52522a7a0cf9_gdc_realn_rehead.bam MPT TCGA.44.2668
9b96860f.7717.46b3.8ab7.2f7d9796c1d4_gdc_realn_rehead.bam MPT TCGA.44.2668
c0994e02.1842.4736.a010.78275693e2ab_gdc_realn_rehead.bam MPT TCGA.44.2668
6a30bada.db34.45d8.af22.2a185cfc120b_gdc_realn_rehead.bam MPT TCGA.44.2662
74be9457.39ce.4029.9076.53b0e57d2067_gdc_realn_rehead.bam MPT TCGA.44.2662
f7f51052.0994.49aa.b55a.f84b21429e80_gdc_realn_rehead.bam MPT TCGA.44.2662
6cb90565.9ca5.48ee.a258.40ea601c7380_gdc_realn_rehead.bam MPT TCGA.44.6147
6fc2c0be.53ca.418f.af9b.0a3a20640519_gdc_realn_rehead.bam MPT TCGA.44.6147
f493fc9c.abd8.4623.b03b.6300c13a3198_gdc_realn_rehead.bam MPT TCGA.44.6147
gdc data TCGA gdcdownload • 260 views
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