How to load AnnotationHub package
1
0
Entering edit mode
aigofaith ▴ 10
@aigofaith-19249
Last seen 5.3 years ago

Hi 

Am trying to load the AnnotionHub package but am getting this error

library(AnnotationHub)
Error: package or namespace load failed for ‘AnnotationHub’:
 object ‘dims’ is not exported by 'namespace:BiocGenerics'
> sessionInfo()
R version 3.5.1 (2018-07-02)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252 
[2] LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] stats4    parallel  stats     graphics  grDevices utils     datasets 
[8] methods   base     

other attached packages:
[1] BiocInstaller_1.32.1 IRanges_2.14.12      S4Vectors_0.18.3    
[4] BiocGenerics_0.26.0 

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.0                    magrittr_1.5                 
 [3] bit_1.1-14                    xtable_1.8-3                 
 [5] R6_2.3.0                      blob_1.1.1                   
 [7] httr_1.4.0                    tools_3.5.1                  
 [9] DBI_1.0.0                     htmltools_0.3.6              
[11] yaml_2.2.0                    bit64_0.9-7                  
[13] digest_0.6.18                 interactiveDisplayBase_1.20.0
[15] shiny_1.2.0                   BiocManager_1.30.4           
[17] later_0.7.5                   promises_1.0.1               
[19] mime_0.6                      memoise_1.1.0                
[21] RSQLite_2.1.1                 compiler_3.5.1               
[23] httpuv_1.4.5.1               

 

 

bioconductor • 524 views
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0
Entering edit mode

Could you please try updating the packages you have installed and see if this remedies the issue. It looks like you may be using outdated versions of packages

install.packages("BiocManager") 
BiocManager::install()

When this asks about Update old packages choose a for all.

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0
Entering edit mode
@martin-morgan-1513
Last seen 3 days ago
United States

Check that you have consistent versions of your packages

BiocManager::valid()
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