biomarRt for fungi
Last seen 3.9 years ago
is there anyone knows how I can access fungal information from biomaRt?
I once saw Ensembl fungi was in there, but now I couldn't find it.
any clues will be a great help to me.
Thank you for your time on this question.
Last seen 1 hour ago
EMBL Heidelberg / de.NBI
You should still be able to access the Ensembl Fungi data using biomaRt. Does this work for you?
ensembl_fungi <- useMart(host="https://fungi.ensembl.org",
port = 443)
dataset description version
1 aclavatus_eg_gene Aspergillus clavatus NRRL 1 genes (ASM271v1) ASM271v1
2 aflavus_eg_gene Aspergillus flavus NRRL3357 genes (JCVI-afl1-v2.0) JCVI-afl1-v2.0
3 afumigatus_eg_gene Aspergillus fumigatus Af293 genes (ASM265v1) ASM265v1
4 afumigatusa1163_eg_gene Aspergillus fumigatus A1163 genes (ASM15014v1) ASM15014v1
5 agossypii_eg_gene Ashbya gossypii genes (ASM9102v1) ASM9102v1
6 anidulans_eg_gene Aspergillus nidulans FGSC A4 genes (ASM1142v1) ASM1142v1
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