I want to download this raw data file "PXD000001" from the PRIDE repository. However I faced with the below Error:
library("MSnbase") library("rpx") px1 <- PXDataset("PXD000001") mzf <- pxget(px1, 6) Downloading 1 file trying URL 'ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2012/03/PXD000001/README.txt' Error in download.file(urls[i], toget[i], ...) : cannot open URL 'ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2012/03/PXD000001/README.txt' In addition: Warning message: In download.file(urls[i], toget[i], ...) : InternetOpenUrl failed: 'The login request was denied > ms <- openMSfile(mzf) Error in openMSfile(mzf) : object 'mzf' not found
Can you please advice me how can I fix this problem and successfully download this data into my RStudio?
Thank you very much.