sva correction for MEDIPS
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tofukaj • 0
@tofukaj-9928
Last seen 13 months ago

Dear great R helpers,

As mentioned in the post title, can surrogate variable (sva) batch correction in MeDIP-seq analysis using MEDIPS package? I must admit that I'm very new to such analysis and pretty poor at the concept. I would be deeply gratitude if someone could show me an example for such correction.

Best regards, Kaj

MEDIPS svaseq sva • 359 views
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Lukas Chavez ▴ 550
@lukas-chavez-5781
Last seen 3.4 years ago
USA/La Jolla/UCSD

Dear Kaj,

sva normalization is not available in MEDIPS. The diffnorm parameter allows to perform umm or quantile normalization prior to calculating differential enrichment.

All the best,

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