Question

Meta-analysis of RNAseq data

0

Entering edit mode

Vladimir Krasikov ▴ 90

@vladimir-krasikov-5097

Last seen 4.5 years ago

Dear Bioconductor experts! I wonder if there any straightforward pipeline for meta-analysis of RNAseq experiments. Any ideas pointing towards suitable packages, websites, papers are appreciated. Is there a way to compare microarray data and RNAseq data.

I just want to initiate discussion and further go with the description of the task I have

Regards

RNAseq meta-analysis microarray public data sets • 824 views

ADD COMMENT • link updated 5.2 years ago by alexvpickering ▴ 110 • written 5.2 years ago by Vladimir Krasikov ▴ 90

score 1 · Answer 1 · 2019-02-07

1

Entering edit mode

alexvpickering ▴ 110

@alexvpickering

Last seen 2.0 years ago

Canada

RNA Meta Analysis allows you to run meta-analyses that include both RNAseq and microarray studies. It currently includes ~8,000 RNAseq studies and 27,584 microarray studies. You can't currently add your own data.

ADD COMMENT • link 5.2 years ago alexvpickering ▴ 110

0

Entering edit mode

Thanks for the suggestion. Will take a look

ADD REPLY • link 5.2 years ago Vladimir Krasikov ▴ 90