Question: ABPkgBuilder (AnnBuilder) subscript out of bounds error
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13.6 years ago by
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ADD COMMENTlink modified 13.6 years ago • written 13.6 years ago by Henrik Hornshøj Jensen90
Answer: ABPkgBuilder (AnnBuilder) subscript out of bounds error
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gravatar for John Zhang
13.6 years ago by
John Zhang2.9k
John Zhang2.9k wrote:
Perhaps one of the database server was down at the time of building the package. Try one more time to see if the problem persists. >X-Original-To: jzhang at jimmy.harvard.edu >Delivered-To: jzhang at jimmy.harvard.edu >X-Spam-Checker-Version: SpamAssassin 3.1.0 (2005-09-13) on hypatia.math.ethz.ch >X-Spam-Level: >X-Spam-Status: No, score=-0.2 required=5.0 tests=AWL, BAYES_50, HTML_70_80, HTML_MESSAGE autolearn=no version=3.1.0 >X-MimeOLE: Produced By Microsoft Exchange V6.5 >MIME-Version: 1.0 >Date: Mon, 6 Feb 2006 09:00:02 +0100 >X-MS-Has-Attach: >X-MS-TNEF-Correlator: >Thread-Topic: ABPkgBuilder (AnnBuilder) subscript out of bounds error >Thread-Index: AcYq81Vg+2x3nDLQTLSVkP0mz3Itdg== >From: Henrik Hornsh?j Jensen <henrikh.jensen at="" agrsci.dk=""> >To: <bioconductor at="" stat.math.ethz.ch=""> >X-OriginalArrivalTime: 06 Feb 2006 08:00:03.0471 (UTC) FILETIME=[55FD21F0:01C62AF3] >Received-SPF: pass hypatia.math.ethz.ch: 129.132.145.15 is authenticated by a trusted mechanism) >Received-SPF: none (hypatia: domain of henrikh.jensen at agrsci.dk does not designate permitted sender hosts) >X-Virus-Scanned: by amavisd-new at stat.math.ethz.ch >Subject: [BioC] ABPkgBuilder (AnnBuilder) subscript out of bounds error >X-BeenThere: bioconductor at stat.math.ethz.ch >X-Mailman-Version: 2.1.6 >List-Id: The Bioconductor Project Mailing List <bioconductor.stat.math.ethz.ch> >List-Unsubscribe: <https: stat.ethz.ch="" mailman="" listinfo="" bioconductor="">, <mailto:bioconductor-request at="" stat.math.ethz.ch?subject="unsubscribe"> >List-Archive: <https: stat.ethz.ch="" pipermail="" bioconductor=""> >List-Post: <mailto:bioconductor at="" stat.math.ethz.ch=""> >List-Help: <mailto:bioconductor-request at="" stat.math.ethz.ch?subject="help"> >List-Subscribe: <https: stat.ethz.ch="" mailman="" listinfo="" bioconductor="">, <mailto:bioconductor-request at="" stat.math.ethz.ch?subject="subscribe"> >X-PMX-Version: 4.7.1.128075, Antispam-Engine: 2.2.0.0, Antispam-Data: 2006.02.05.230611 >X-PMX-Spam: Probability=7%, Report='__CT 0, __CTYPE_HAS_BOUNDARY 0, __CTYPE_MULTIPART 0, __HAS_MSGID 0, __IMS_MSGID 0, __MIME_TEXT_ONLY 0, __MIME_VERSION 0, __SANE_MSGID 0, __STOCK_CRUFT 0' > >Anyone seen this error with ABPkgBuilder (AnnBuilder) and knows how to resolve it? > > >To build a data annotation package, this piece of code usually works for me: > >ABPkgBuilder(baseName = myBase, srcUrls = mySrcUrls, baseMapType = myBaseType, >pkgName = myPkgName, pkgPath = myDir, >organism = "Homo sapiens", version = "2.0.0", >author = list(author = "Henrik Hornshoj <henrikh.jensen at="" agrsci.dk="" <mailto:henrikh.jensen="" at="" agrsci.dk=""> >", >maintainer = "Henrik Hornshoj <henrikh.jensen at="" agrsci.dk="" <mailto:henrikh.jensen="" at="" agrsci.dk=""> >"), >fromWeb = TRUE) > > >But today I suddenly get the following error: > > >Attaching package: 'GO' > > > The following object(s) are masked from package:AnnBuilder : > > GO > >Warning message: >Built for UCSC is not valid! in: getUCSCBuilt(organism) >Failed to get data from URL: ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa00191.gene <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa00191.gene=""> >Failed to get data from URL: ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa00192.gene <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa00192.gene=""> >. >. >Failed to get data from URL: ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa99998.gene <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa99998.gene=""> >Failed to get data from URL: ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa99999.gene <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa99999.gene=""> >[1] "4010 2 2" >Error in allis.na(annotation[, "GO"])) : subscript out of bounds > > >Any suggestions are welcome!! > >Regards, >Henrik Hornsh?j > > [[alternative HTML version deleted]] > Jianhua Zhang Department of Medical Oncology Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084
ADD COMMENTlink written 13.6 years ago by John Zhang2.9k
Answer: ABPkgBuilder (AnnBuilder) subscript out of bounds error
0
gravatar for Ting-Yuan Liu FHCRC
13.6 years ago by
Ting-Yuan Liu FHCRC780 wrote:
Hi Henrik, Which version of AnnBuilder you are using? I believe the "subscript out of bounds error" had been fixed. If you tried the developmental version AnnBuilder, you should not get this error again. HTH, Ting-Yuan ______________________________________ Ting-Yuan Liu Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center Seattle, WA, USA ______________________________________ On Mon, 6 Feb 2006, Henrik Hornsh?j Jensen wrote: > Anyone seen this error with ABPkgBuilder (AnnBuilder) and knows how to resolve it? > > > To build a data annotation package, this piece of code usually works for me: > > ABPkgBuilder(baseName = myBase, srcUrls = mySrcUrls, baseMapType = myBaseType, > pkgName = myPkgName, pkgPath = myDir, > organism = "Homo sapiens", version = "2.0.0", > author = list(author = "Henrik Hornshoj <henrikh.jensen at="" agrsci.dk="" <mailto:henrikh.jensen="" at="" agrsci.dk=""> >", > maintainer = "Henrik Hornshoj <henrikh.jensen at="" agrsci.dk="" <mailto:henrikh.jensen="" at="" agrsci.dk=""> >"), > fromWeb = TRUE) > > > But today I suddenly get the following error: > > > Attaching package: 'GO' > > > The following object(s) are masked from package:AnnBuilder : > > GO > > Warning message: > Built for UCSC is not valid! in: getUCSCBuilt(organism) > Failed to get data from URL: ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa00191.gene <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa00191.gene=""> > Failed to get data from URL: ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa00192.gene <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa00192.gene=""> > . > . > Failed to get data from URL: ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa99998.gene <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa99998.gene=""> > Failed to get data from URL: ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa99999.gene <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa99999.gene=""> > [1] "4010 2 2" > Error in allis.na(annotation[, "GO"])) : subscript out of bounds > > > Any suggestions are welcome!! > > Regards, > Henrik Hornshj > > [[alternative HTML version deleted]] > >
ADD COMMENTlink written 13.6 years ago by Ting-Yuan Liu FHCRC780
I still have the same error with the latest version. Julien Le Lundi 6 F?vrier 2006 19:21, Ting-Yuan Liu a ?crit?: > Hi Henrik, > > Which version of AnnBuilder you are using? I believe the "subscript out > of bounds error" had been fixed. If you tried the developmental version > AnnBuilder, you should not get this error again. > > HTH, > Ting-Yuan > ______________________________________ > Ting-Yuan Liu > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > Seattle, WA, USA > ______________________________________ > > On Mon, 6 Feb 2006, Henrik Hornsh?j Jensen wrote: > > Anyone seen this error with ABPkgBuilder (AnnBuilder) and knows how to > > resolve it? > > > > > > To build a data annotation package, this piece of code usually works for > > me: > > > > ABPkgBuilder(baseName = myBase, srcUrls = mySrcUrls, baseMapType = > > myBaseType, pkgName = myPkgName, pkgPath = myDir, > > organism = "Homo sapiens", version = "2.0.0", > > author = list(author = "Henrik Hornshoj <henrikh.jensen at="" agrsci.dk=""> > <mailto:henrikh.jensen at="" agrsci.dk=""> >", maintainer = "Henrik Hornshoj > > <henrikh.jensen at="" agrsci.dk="" <mailto:henrikh.jensen="" at="" agrsci.dk=""> >"), fromWeb > > = TRUE) > > > > > > But today I suddenly get the following error: > > > > > > Attaching package: 'GO' > > > > > > The following object(s) are masked from package:AnnBuilder : > > > > GO > > > > Warning message: > > Built for UCSC is not valid! in: getUCSCBuilt(organism) > > Failed to get data from URL: > > ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa00191.gene > > <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa00191.gene=""> Failed to > > get data from URL: > > ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa00192.gene > > <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa00192.gene=""> . > > . > > Failed to get data from URL: > > ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa99998.gene > > <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa99998.gene=""> Failed to > > get data from URL: > > ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa99999.gene > > <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa99999.gene=""> [1] "4010 2 > > 2" > > Error in allis.na(annotation[, "GO"])) : subscript out of bounds > > > > > > Any suggestions are welcome!! > > > > Regards, > > Henrik Hornshj > > > > [[alternative HTML version deleted]]
ADD REPLYlink written 13.6 years ago by TEXTORIS Julien160
Answer: ABPkgBuilder (AnnBuilder) subscript out of bounds error
0
gravatar for Seth Falcon
13.6 years ago by
Seth Falcon7.4k
Seth Falcon7.4k wrote:
Hi Henrik and Julien, If you are still having troubles getting AnnBuilder to do what you want, please post again after having a look through the posting guide: http://www.bioconductor.org/docs/postingGuide.html >From your mails, I'm finding it difficult to help because I'm not certain what code you are attempting to run, what the error output is, or what are the exact R and package versions you are using (sessionInfo()). + seth On 7 Feb 2006, HenrikH.Jensen at agrsci.dk wrote: > > I am using the latest version, just updated everything. > > Did not try the developer version though. > > I also tried running my script with days in between, to see if the > error is caused by source where it downloads from. But this did not > help. > > Regards, > Henrik > > > -----Oprindelig meddelelse----- Fra: > bioconductor-bounces at stat.math.ethz.ch > [mailto:bioconductor-bounces at stat.math.ethz.ch] P? vegne af TEXTORIS > Julien Sendt: Tuesday, February 07, 2006 8:24 AM Til: > bioconductor at stat.math.ethz.ch Emne: Re: [BioC] ABPkgBuilder > (AnnBuilder) subscript out of bounds error > > I still have the same error with the latest version. > > Julien > > Le Lundi 6 F?vrier 2006 19:21, Ting-Yuan Liu a ?crit?: >> Hi Henrik, >> >> Which version of AnnBuilder you are using? I believe the >> "subscript out of bounds error" had been fixed. If you tried the >> developmental version AnnBuilder, you should not get this error >> again. >> >> HTH, >> Ting-Yuan >> ______________________________________ >> Ting-Yuan Liu >> Program in Computational Biology >> Division of Public Health Sciences >> Fred Hutchinson Cancer Research Center Seattle, WA, USA >> ______________________________________ >> >> On Mon, 6 Feb 2006, Henrik Hornsh?j Jensen wrote: >>> Anyone seen this error with ABPkgBuilder (AnnBuilder) and knows >>> how to resolve it? >>> >>> >>> To build a data annotation package, this piece of code usually >>> works for me: >>> >>> ABPkgBuilder(baseName = myBase, srcUrls = mySrcUrls, baseMapType = >>> myBaseType, pkgName = myPkgName, pkgPath = myDir, organism = "Homo >>> sapiens", version = "2.0.0", author = list(author = "Henrik >>> Hornshoj <henrikh.jensen at="" agrsci.dk="">>> <mailto:henrikh.jensen at="" agrsci.dk=""> >", maintainer = "Henrik >>> Hornshoj <henrikh.jensen at="" agrsci.dk="">>> <mailto:henrikh.jensen at="" agrsci.dk=""> >"), fromWeb = TRUE) >>> >>> >>> But today I suddenly get the following error: >>> >>> >>> Attaching package: 'GO' >>> >>> >>> The following object(s) are masked from package:AnnBuilder : >>> >>> GO >>> >>> Warning message: Built for UCSC is not valid! in: >>> getUCSCBuilt(organism) Failed to get data from URL: >>> ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa00191.gene >>> <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa00191.gene=""> >>> Failed to get data from URL: >>> ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa00192.gene >>> <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa00192.gene=""> . . >>> Failed to get data from URL: >>> ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa99998.gene >>> <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa99998.gene=""> >>> Failed to get data from URL: >>> ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa99999.gene >>> <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa99999.gene=""> [1] >>> "4010 2 2" Error in allis.na(annotation[, "GO"])) : subscript out >>> of bounds >>> >>> >>> Any suggestions are welcome!! >>> >>> Regards, >>> Henrik Hornshj >>> >>> [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor
ADD COMMENTlink written 13.6 years ago by Seth Falcon7.4k
Answer: ABPkgBuilder (AnnBuilder) subscript out of bounds error
0
gravatar for Henrik Hornshøj Jensen
13.6 years ago by
I am using the latest version, just updated everything. Did not try the developer version though. I also tried running my script with days in between, to see if the error is caused by source where it downloads from. But this did not help. Regards, Henrik -----Oprindelig meddelelse----- Fra: bioconductor-bounces at stat.math.ethz.ch [mailto:bioconductor- bounces at stat.math.ethz.ch] P? vegne af TEXTORIS Julien Sendt: Tuesday, February 07, 2006 8:24 AM Til: bioconductor at stat.math.ethz.ch Emne: Re: [BioC] ABPkgBuilder (AnnBuilder) subscript out of bounds error I still have the same error with the latest version. Julien Le Lundi 6 F?vrier 2006 19:21, Ting-Yuan Liu a ?crit?: > Hi Henrik, > > Which version of AnnBuilder you are using? I believe the "subscript > out of bounds error" had been fixed. If you tried the developmental > version AnnBuilder, you should not get this error again. > > HTH, > Ting-Yuan > ______________________________________ > Ting-Yuan Liu > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center Seattle, WA, USA > ______________________________________ > > On Mon, 6 Feb 2006, Henrik Hornsh?j Jensen wrote: > > Anyone seen this error with ABPkgBuilder (AnnBuilder) and knows how > > to resolve it? > > > > > > To build a data annotation package, this piece of code usually works > > for > > me: > > > > ABPkgBuilder(baseName = myBase, srcUrls = mySrcUrls, baseMapType = > > myBaseType, pkgName = myPkgName, pkgPath = myDir, organism = "Homo > > sapiens", version = "2.0.0", author = list(author = "Henrik Hornshoj > > <henrikh.jensen at="" agrsci.dk="" <mailto:henrikh.jensen="" at="" agrsci.dk=""> >", > > maintainer = "Henrik Hornshoj <henrikh.jensen at="" agrsci.dk=""> > <mailto:henrikh.jensen at="" agrsci.dk=""> >"), fromWeb = TRUE) > > > > > > But today I suddenly get the following error: > > > > > > Attaching package: 'GO' > > > > > > The following object(s) are masked from package:AnnBuilder : > > > > GO > > > > Warning message: > > Built for UCSC is not valid! in: getUCSCBuilt(organism) Failed to > > get data from URL: > > ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa00191.gene > > <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa00191.gene=""> Failed > > to get data from URL: > > ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa00192.gene > > <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa00192.gene=""> . > > . > > Failed to get data from URL: > > ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa99998.gene > > <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa99998.gene=""> Failed > > to get data from URL: > > ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa99999.gene > > <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa99999.gene=""> [1] > > "4010 2 2" > > Error in allis.na(annotation[, "GO"])) : subscript out of bounds > > > > > > Any suggestions are welcome!! > > > > Regards, > > Henrik Hornshj > > > > [[alternative HTML version deleted]] _______________________________________________ Bioconductor mailing list Bioconductor at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor
ADD COMMENTlink written 13.6 years ago by Henrik Hornshøj Jensen90
Answer: ABPkgBuilder (AnnBuilder) subscript out of bounds error
0
gravatar for Henrik Hornshøj Jensen
13.6 years ago by
Hey, Looks like it works again now with the developer versions of R (2.3) and AnnBuilder (1.9.11), although I had to try a couple of times before it ran all the way through. Also, I had to trim the accession IDs in the mybase file (e.g. NM_000962.2 to NM_000962) before I was able to get any mappings. Anyhow, it seems to work now. Thanks for the tip to use the developer version. Henrik -----Oprindelig meddelelse----- Fra: bioconductor-bounces at stat.math.ethz.ch [mailto:bioconductor- bounces at stat.math.ethz.ch] P? vegne af Seth Falcon Sendt: Tuesday, February 07, 2006 4:02 PM Til: bioconductor at stat.math.ethz.ch Emne: Re: [BioC] ABPkgBuilder (AnnBuilder) subscript out of bounds error Hi Henrik and Julien, If you are still having troubles getting AnnBuilder to do what you want, please post again after having a look through the posting guide: http://www.bioconductor.org/docs/postingGuide.html >From your mails, I'm finding it difficult to help because I'm not certain what code you are attempting to run, what the error output is, or what are the exact R and package versions you are using (sessionInfo()). + seth On 7 Feb 2006, HenrikH.Jensen at agrsci.dk wrote: > > I am using the latest version, just updated everything. > > Did not try the developer version though. > > I also tried running my script with days in between, to see if the > error is caused by source where it downloads from. But this did not > help. > > Regards, > Henrik > > > -----Oprindelig meddelelse----- Fra: > bioconductor-bounces at stat.math.ethz.ch > [mailto:bioconductor-bounces at stat.math.ethz.ch] P? vegne af TEXTORIS > Julien Sendt: Tuesday, February 07, 2006 8:24 AM Til: > bioconductor at stat.math.ethz.ch Emne: Re: [BioC] ABPkgBuilder > (AnnBuilder) subscript out of bounds error > > I still have the same error with the latest version. > > Julien > > Le Lundi 6 F?vrier 2006 19:21, Ting-Yuan Liu a ?crit?: >> Hi Henrik, >> >> Which version of AnnBuilder you are using? I believe the "subscript >> out of bounds error" had been fixed. If you tried the developmental >> version AnnBuilder, you should not get this error again. >> >> HTH, >> Ting-Yuan >> ______________________________________ >> Ting-Yuan Liu >> Program in Computational Biology >> Division of Public Health Sciences >> Fred Hutchinson Cancer Research Center Seattle, WA, USA >> ______________________________________ >> >> On Mon, 6 Feb 2006, Henrik Hornsh?j Jensen wrote: >>> Anyone seen this error with ABPkgBuilder (AnnBuilder) and knows how >>> to resolve it? >>> >>> >>> To build a data annotation package, this piece of code usually works >>> for me: >>> >>> ABPkgBuilder(baseName = myBase, srcUrls = mySrcUrls, baseMapType = >>> myBaseType, pkgName = myPkgName, pkgPath = myDir, organism = "Homo >>> sapiens", version = "2.0.0", author = list(author = "Henrik Hornshoj >>> <henrikh.jensen at="" agrsci.dk="" <mailto:henrikh.jensen="" at="" agrsci.dk=""> >", >>> maintainer = "Henrik Hornshoj <henrikh.jensen at="" agrsci.dk="">>> <mailto:henrikh.jensen at="" agrsci.dk=""> >"), fromWeb = TRUE) >>> >>> >>> But today I suddenly get the following error: >>> >>> >>> Attaching package: 'GO' >>> >>> >>> The following object(s) are masked from package:AnnBuilder : >>> >>> GO >>> >>> Warning message: Built for UCSC is not valid! in: >>> getUCSCBuilt(organism) Failed to get data from URL: >>> ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa00191.gene >>> <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa00191.gene=""> >>> Failed to get data from URL: >>> ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa00192.gene >>> <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa00192.gene=""> . . >>> Failed to get data from URL: >>> ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa99998.gene >>> <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa99998.gene=""> >>> Failed to get data from URL: >>> ftp://ftp.genome.ad.jp/pub/kegg/pathways/hsa/hsa99999.gene >>> <ftp: ftp.genome.ad.jp="" pub="" kegg="" pathways="" hsa="" hsa99999.gene=""> [1] >>> "4010 2 2" Error in allis.na(annotation[, "GO"])) : subscript out >>> of bounds >>> >>> >>> Any suggestions are welcome!! >>> >>> Regards, >>> Henrik Hornshj >>> >>> [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor _______________________________________________ Bioconductor mailing list Bioconductor at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor
ADD COMMENTlink written 13.6 years ago by Henrik Hornshøj Jensen90
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