Isoform coexpression using WGCNA
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maya.kappil ▴ 10
@mayakappil-18569
Last seen 21 months ago

Hello,

I have been working with transcript-level RNAseq data recently (mostly looking at differential transcript usage), and I was wondering if there is a preferred pipeline to look at coexpression of exon-level/transcript-level count data using WGCNA. I have seen a couple of methods described in the literature (including CoSplicEx) which I am interested to try, but I wanted to check if there is something that is particularly recommended or advised against.

Thanks!

WGCNA • 214 views
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Hi Maya, I was wondering how did you proceed with the WGCNA analysis using the exon level count data? I have a similar data from DEXSeq analysis. Any advise would be helpful!! Thank you!

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