Hello,

I have been working with transcript-level RNAseq data recently (mostly looking at differential transcript usage), and I was wondering if there is a preferred pipeline to look at coexpression of exon-level/transcript-level count data using WGCNA. I have seen a couple of methods described in the literature (including CoSplicEx) which I am interested to try, but I wanted to check if there is something that is particularly recommended or advised against.

Thanks!