Question: Isoform coexpression using WGCNA
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gravatar for maya.kappil
4 months ago by
maya.kappil10
maya.kappil10 wrote:

Hello,

I have been working with transcript-level RNAseq data recently (mostly looking at differential transcript usage), and I was wondering if there is a preferred pipeline to look at coexpression of exon-level/transcript-level count data using WGCNA. I have seen a couple of methods described in the literature (including CoSplicEx) which I am interested to try, but I wanted to check if there is something that is particularly recommended or advised against.

Thanks!

wgcna • 96 views
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