After the DESEQ2 analysis, the baseMean values from the results range from (0.2 to 87622.00). For the selected results I have used 0.05 FDR cutt off. But, still some baseMeans are as low as 0.2.
Can I use the baseMean cut off as 5.
My concern is if the baseMean is this low , then the log2FC will be high, but may not be real.