Hi and good day,
Can anyone explain to me what should I do if got the following results after running DeSeq? What should I do with the outliers and low counts? I have had filtered the low count <5 before running the analysis.
### result for Sex (F as reference level) res_Sex <-results(dds_full, name="Sex_M_vs_F") summary(res_Sex) out of 15895 with nonzero total read count adjusted p-value < 0.1 LFC > 0 (up) : 893, 5.6% LFC < 0 (down) : 1550, 9.8% outliers  : 19, 0.12% low counts  : 309, 1.9% (mean count < 7)  see 'cooksCutoff' argument of ?results  see 'independentFiltering' argument of ?results
Thank you in advance.