I know that LFC threshold and altHypothesis are applied only in Wald tests. Is there any way to sort out gene based on LFC thresholding post LRT test? LRT result tables usually provide pvalue of the tested hyposthesis and LFC for the specified conditions only. Would it be statistically relevant to do LRT test first, retrieve adj Pvalues and then do LFCthresholding on pairwise wald test and take obtained LFC for each condition separately?
Thank you fr your help,
I have full access to the information, and now I need to sort it based on the LRT result and the LFC. To get the desired results from the LRT test, you cannot use the LFCthreshold criterion. My question is, how do I use FC to narrow my search resultst for bubble shooter