Truncated Gviz plot
1
0
Entering edit mode
@mariokeller1988-13652
Last seen 12 months ago
Germany

Hi, I have a little aesthetic issue with my sashimi plots. enter image description here.

In all of my plots the sashimi numbers of the exon skipping event are cropped although there is enough space.

Has someone experienced the same problem and knows a solution? I already changed all parameters but without success.

Thanks!

plotTracks(list(gtrack, altrack1, altrack2, altrack3, grtrack), sashimiFilter = introns.of.interest, from = plot.start, to = plot.end, chromosome = chr, type = c("coverage","sashimi"), sashimiNumbers=TRUE, sizes = c(0.5,0.5,0.5,0.5,0.5))
Gviz sashimi plot • 1.1k views
ADD COMMENT
0
Entering edit mode
Robert Ivanek ▴ 730
@robert-ivanek-5892
Last seen 4 months ago
Switzerland

Hi Mario,

Thanks for reporting it. I changed settings for "sashimi" plots in Gviz. There should be new version compiled in release (1.26.5) and in development (1.27.6). They should be available in next few days. Let me know if that fixed your problem.

Best Robert

ADD COMMENT

Login before adding your answer.

Traffic: 566 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6