Question: Deseq2 padjusted values versus pvalue
0
gravatar for tanyabioinfo
3 months ago by
tanyabioinfo20
tanyabioinfo20 wrote:

I would like to know the difference between p value and p adjusted value which is given an an output by Deseq2 package

MY second question is what is the cut off of padj which would be ideal to determine deferentially expressed genes

Can anyone please help me with this.

Many Thanks

Tanya Singh

rnaseq deseq2 padjusted • 88 views
ADD COMMENTlink modified 3 months ago by Michael Love23k • written 3 months ago by tanyabioinfo20
Answer: Deseq2 padjusted values versus pvalue
0
gravatar for Michael Love
3 months ago by
Michael Love23k
United States
Michael Love23k wrote:

We have a workflow for beginners to DE analysis, with a section relevant to your question:

https://www.bioconductor.org/packages/devel/workflows/vignettes/rnaseqGene/inst/doc/rnaseqGene.html#multiple-testing

ADD COMMENTlink written 3 months ago by Michael Love23k
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