Question: genomicFeature---paired end read::reads from the same pair were found not adjacent to each
9 months ago by
memoly101 • 0
memoly101 • 0 wrote:
For the following :
> fCountsList = featureCounts(props, annot.ext="/patho/to/gtf/GRCh38.gtf", isGTFA nnotationFile=TRUE, nthreads=16, isPairedEnd=TRUE, allowMultiOverlap=TRUE, fraction=FALSE)
my job is killed by the following :
WARNING: reads from the same pair were found not adjacent to each other in the input (due to read sorting by location or reporting of multi-mapping read pairs). Pairing up the read pairs.
Any pieces of advice?
ADD COMMENT • link •