how to retrieve binding affinity matrix in diffbind
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hamaor • 0
@hamaor-9799
Last seen 2.7 years ago

hey everyone, I'm performing ChIP-Seq analysis using diffbind, after doing:

dba.count(peaksets, summits=250)

I would like to get the binding affinity Matrix into a text file.

help will be highly appriciated!!

diffbind dba.count • 610 views
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Rory Stark ★ 4.1k
@rory-stark-5741
Last seen 18 days ago
CRUK, Cambridge, UK
counts <- dba.peakset(myDBA, bRetrieve=TRUE, writeFile="myFile.csv")

You will get back the normalized count scores; you can get raw read counts by changing the value for the score parameter in dba.count().

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