Hello there, I have 32 samples without any string 'treated' or something like this. File names are the sample names. In another csv file I have information about those count files (case/control). How can I load these files for differential expression analysis. In the vignettes, they used 'grep' and 'sub' for htseq output, I am not sure how can I adapt this to my dataset. 'https://www.bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#htseq'. I am new in rnaseq analysis. Any help? Best Regards Zillur
match function in R:
?match. This will give you a numeric vector that you can use to put one vector or table in the order of another vector or table. If you're just starting with R, you might try getting some help from someone in your institute who can look over your shoulder.