Pathview won't colour even with matching IDs
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@francescogualdrini-20233
Last seen 4.8 years ago

Hi,

I have an issue with pathview running in a loop. I have multiple lists of genes (Entrez ids) and their log2 fold change as numeric vectors. When I loop through them and loop through all metabolic human pathways I get the png figure with no colours even if in the pv.out$plot.data.gene I do get matches but are all set to white.

Any idea why?

Thanks a lot

Francesco

pathview • 793 views
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Can you provide a short, self-contained, example of the code you're using? It's much easier for people to offer advice if they can start with a copy/paste example.

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