Question: Pathview won't colour even with matching IDs
gravatar for francesco.gualdrini
3 months ago by
francesco.gualdrini0 wrote:


I have an issue with pathview running in a loop. I have multiple lists of genes (Entrez ids) and their log2 fold change as numeric vectors. When I loop through them and loop through all metabolic human pathways I get the png figure with no colours even if in the pv.out$ I do get matches but are all set to white.

Any idea why?

Thanks a lot


pathview • 85 views
ADD COMMENTlink written 3 months ago by francesco.gualdrini0

Can you provide a short, self-contained, example of the code you're using? It's much easier for people to offer advice if they can start with a copy/paste example.

ADD REPLYlink modified 3 months ago • written 3 months ago by Mike Smith3.7k
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