Question: Can I input peak files from Genrich as input reads in DiffBind?
0
5 months ago by
gsenevirathne0 wrote:

Hi,

I have been running Genrich (similar to MACS2) as way of calling peaks for my ATAC-seq analysis. My output files from the Genrich are .log and .narroPeak files. Can I use the peak files in DiffBind?

Thanks!

Gayani

diffbind genrich • 221 views
modified 4 months ago by Rory Stark2.8k • written 5 months ago by gsenevirathne0
Answer: Can I input peak files from Genrich as input reads in DiffBind?
1
4 months ago by
Rory Stark2.8k
CRUK, Cambridge, UK
Rory Stark2.8k wrote:

Yes, this should work with the .narrowPeak files. In the sample sheet, the values in the PeakCaller column should be set to "narrow".