Question: differential expression analysis of merged dataset
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gravatar for pratikshasharma47
7 months ago by
pratikshasharma470 wrote:

I wanted to know how to obtain differentially expressed genes in merged dataset of rice(GPL2025)

microarray • 133 views
ADD COMMENTlink modified 7 months ago by James W. MacDonald51k • written 7 months ago by pratikshasharma470
Answer: differential expression analysis of merged dataset
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gravatar for James W. MacDonald
7 months ago by
United States
James W. MacDonald51k wrote:

The conventional answer is that you can't easily combine data from different labs and get reasonable results, particularly if you are trying to compare samples that are confounded with technical variables (lab of origin, cell type, etc). You could read the vignettes for the GeneMeta package, and maybe SCAN.UPC or fRMA (although I doubt there are any frozen RMA data for rice).

ADD COMMENTlink written 7 months ago by James W. MacDonald51k
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