Question: Breast cancer subtypes in TCGAutils
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gravatar for vittorio.fortino
8 months ago by
vittorio.fortino0 wrote:

I have noticed that several groupings of BRCA samples can be retrieved with "colData", and I would like to know how these groupings were obtained (algorithms, publications, etc.)

Integrated.Clusters.with.PAM50 ? Integrated.Clusters.no.exp. ? Integrated.Clusters.unsup.exp. ?

Thanks in advance for your precious help!

tcgautils • 125 views
ADD COMMENTlink modified 8 months ago by Levi Waldron980 • written 8 months ago by vittorio.fortino0
Answer: Breast cancer subtypes in TCGAutils
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gravatar for Levi Waldron
8 months ago by
Levi Waldron980
CUNY Graduate School of Public Health and Health Policy, New York, NY
Levi Waldron980 wrote:

Apologies that subtype provenance isn't yet documented in the object metadata, but subtypes in curatedTCGAData were all extracted from supplementary materials of the primary TCGA publication for that cancer type.

ADD COMMENTlink written 8 months ago by Levi Waldron980
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