Error in intramodularConnectivity(ADJ1, colorh1) : object 'colorh1' not found
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@pratikshasharma47-20320
Last seen 2.4 years ago

Hi I am using WGCNA for my affymetrix data

ADJ1=abs(cor(eset,use="p"))^6
Alldegrees1=intramodularConnectivity(ADJ1, colorh1)
Error in intramodularConnectivity(ADJ1, colorh1) : object 'colorh1' not found

this is the error that appears , any suggestions would be heplful, thank you.

error wgcna affymetrix data • 326 views
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@peter-langfelder-4469
Last seen 12 months ago
United States

Your code probably does not define colorh1 anywhere before you attempt to use it in your code that you posted.

But there's no way to tell because you did not post a reproducible example or at least full code. (If the above is the full code, it clearly misses the definition of colorh1.) It is best to follow WGCNA tutorials first and then carefully adapt them to your data.

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