Question: Error in intramodularConnectivity(ADJ1, colorh1) : object 'colorh1' not found
0
gravatar for pratikshasharma47
8 months ago by
pratikshasharma470 wrote:

Hi I am using WGCNA for my affymetrix data

ADJ1=abs(cor(eset,use="p"))^6
Alldegrees1=intramodularConnectivity(ADJ1, colorh1)
Error in intramodularConnectivity(ADJ1, colorh1) : object 'colorh1' not found

this is the error that appears , any suggestions would be heplful, thank you.

wgcna error affymetrix data • 143 views
ADD COMMENTlink modified 8 months ago by Peter Langfelder2.3k • written 8 months ago by pratikshasharma470
Answer: Error in intramodularConnectivity(ADJ1, colorh1) : object 'colorh1' not found
0
gravatar for Peter Langfelder
8 months ago by
United States
Peter Langfelder2.3k wrote:

Your code probably does not define colorh1 anywhere before you attempt to use it in your code that you posted.

But there's no way to tell because you did not post a reproducible example or at least full code. (If the above is the full code, it clearly misses the definition of colorh1.) It is best to follow WGCNA tutorials first and then carefully adapt them to your data.

ADD COMMENTlink modified 8 months ago • written 8 months ago by Peter Langfelder2.3k
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