ChAMP pipeline error (champ.import)
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mhebba • 0
Last seen 4.5 years ago

I am trying to work on ChAMP. It worked great with simulated data. I am trying it on my results now. I merged two .csv files (controls and samples). I got rid of the Sentrix ID format issue and error about 'incomplete last line'. I still get this error. My arraytype is EPIC. The Sentrix IDs and idat files match but this error persists. I don't know what to do next.

Find CSV Success Reading CSV File Replace SentrixPosition into Array Replace SentrixID into Slide Error in champ.import(directory, arraytype = arraytype) : Error Match between pd file and Green Channel IDAT file.

software error • 1.4k views

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