Question: (Closed) output of the function "makeCountsFromAbundance"
gravatar for capricygcapricyg
6 months ago by
capricygcapricyg0 wrote:

Hello, there,

I am testing the function "makeCountsFromAbundance" using the following data (numbers derived from Salmon output):

count a b c d A 27 50 67 36 B 0 0 0 0 length a b c d A 310.08 395.79 504.53 342.48 B 1026.00 1008.00 1009.00 1021.00 abundance [,1] [,2] [,3] [,4] [1,] 3.14 4.95 3.84 4.91 [2,] 0.00 0.00 0.00 0.00 f=makeCountsFromAbundance(count,abundance,length,countsFromAbundance="scaledTPM")
f a b c d A 27 50 67 36 B 0 0 0 0

I don't think I got the "scaledTPM" as the documentation indicated... Instead, the output is just raw counts. Could anyone help me with it?



tximport • 70 views
ADD COMMENTlink written 6 months ago by capricygcapricyg0

Hello capricygcapricyg!

Questions similar to yours can already be found at:

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ADD REPLYlink written 6 months ago by shepherl ♦♦ 1.7k
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