Question: scATAC-seq analysis, data preprocessing
0
gravatar for chipolino
12 days ago by
chipolino0
chipolino0 wrote:

Hi,

During scATAC-seq data preprocessing, does it make sense to filter data matrix, so it contains only most variable peaks (in the same way how we do it for scRNA-seq), before any further dimensionality reduction or clustering analysis?

Thanks

scatac-seq • 66 views
ADD COMMENTlink modified 11 days ago by Aaron Lun23k • written 12 days ago by chipolino0

Cross-posted on Biostars as suggested by Aaron.

ADD REPLYlink modified 10 days ago • written 10 days ago by ATpoint0
Answer: scATAC-seq analysis, data preprocessing
0
gravatar for Aaron Lun
11 days ago by
Aaron Lun23k
Cambridge, United Kingdom
Aaron Lun23k wrote:

You're not asking about a specific Bioconductor package; a general question should be posted on a more general forum like Biostars. But for what it's worth, the answer is: probably yes.

ADD COMMENTlink written 11 days ago by Aaron Lun23k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 119 users visited in the last hour