I have been using the "Analyzing RNA-seq data with DESeq2" (Love, Anders and Huber) and worked really well so far, thanks guys!
However, I would like to export and plot the different expression patterns of genes within my dataset. What I mean is to be able to group them by similar expression patterns +/- X error and see expression similarities responding to the conditions, and have different expression "trends" within the transcriptome.
I was wondering if there would be any function on DESeq2 or any other package that could do something similar? It would be interesting!