Question: Normalized sashimi plots with Gviz
0
gravatar for benjamin.carter
4 weeks ago by
benjamin.carter0 wrote:

Hello, I have some RNA-seq data and would like to generate sashimi plots to visualize differential exon usage between samples. I would like these plots to be normalized for library size. I would also like to use R if possible to work with existing pipeline. I see that Gviz can generate sashimi plots, but I am not sure if it can normalize the output for library size. Does anyone have any suggestions for how to use Gviz or other R package to accomplish this? Thanks for the assistance!

-Ben

gviz sashimi • 44 views
ADD COMMENTlink written 4 weeks ago by benjamin.carter0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 169 users visited in the last hour