when I try to create a
STRINGdb object, using the following code:
> library(STRINGdb) > string_db = STRINGdb$new(version = "11", species=9606, score_threshold=700, input_directory="stringdbdata/")
I get this error:
ERROR: The version 11 is not valid. Please use one of the following versions: 9_05, 9_1, 10Error in .Object$initialize(...) :
As I understand, version 11 is out since January, and it is accessible from here. Does it mean that
STRINGdb's R interface is not compatible with version 11 or am I doing something wrong with my code?
My other question is that, suppose I downloaded all the required files manually, is there a method to load them into a STRINGdb object? I've read the package's vignette and documentations, but since I'm a beginner at R, I couldn't find an answer. Thank you for your time.