The peak format required by DiffBind is BED, whereas MACS2 does not output BED files as MACS14 (the earlier release) did. Rather, it outputs BedGraph (bdg) files, or a variant format of a BED file (see here: https://github.com/taoliu/MACS under Output Files), i.e., the *.narrowPeak or *.broadPeak files. How can this be resolved?
Question: Reading peaks from MACS2 with DiffBind
5 months ago by
aviv.de-morgan • 0
aviv.de-morgan • 0 wrote:
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Answer: Reading peaks from MACS2 with DiffBind
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