Gviz colour reads by Read Group in AlignmentTrack
0
0
Entering edit mode
ido.idobar • 0
@idoidobar-20950
Last seen 4.8 years ago

Hi There, Is there a way to color reads by their Read Group in AlignmentTrack in Gviz? It can either be in the stacked view or the coverage histogram (preferred). My data comes from a multi-sample BAM file, with Read Group information for each read.

I could achieve this in IGV (see right pane below) Gviz vs IGV

In addition, can I add the chromosome name somewhere on/next to the GenomeAxisTrack?

Many thanks, Ido

gviz igv • 702 views
ADD COMMENT

Login before adding your answer.

Traffic: 599 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6