Question: Gviz colour reads by Read Group in AlignmentTrack
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gravatar for ido.idobar
3 months ago by
ido.idobar0
ido.idobar0 wrote:

Hi There, Is there a way to color reads by their Read Group in AlignmentTrack in Gviz? It can either be in the stacked view or the coverage histogram (preferred). My data comes from a multi-sample BAM file, with Read Group information for each read.

I could achieve this in IGV (see right pane below) Gviz vs IGV

In addition, can I add the chromosome name somewhere on/next to the GenomeAxisTrack?

Many thanks, Ido

gviz igv • 73 views
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