Question: Number of profiles in JASPAR2018
0
gravatar for capricygcapricyg
5 months ago by
capricygcapricyg0 wrote:

Hello, there,

I would like to get all the mouse transcription factors from Jasper using this package and some how found it only has 119 records.

> library(JASPAR2018)
> opts=list(species=10090)
> library(TFBSTools)
> jaspar_data=getMatrixSet(JASPAR2018,opts)
> length(jaspar_data)
[1] 119

However, when I went to the JASPAR website (http://jaspar.genereg.net/search?q=&collection=all&taxgroup=all&taxid=10090&type=all&class=all&family=all&version=latest), it shows 542 records.

How can it be so different?

Kind regards,

C.

jaspar2018 • 65 views
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