Question: How can I import KEGG annotations
0
gravatar for mariagly
4 months ago by
mariagly0
mariagly0 wrote:

Hello,

I have been using DESeq2 for my metagenomic data analysis. I have KEGG IDs but not the associated names. Is there a function I can use to annotate KEGG IDs (like Bioconductor's biomaRt package used to map ENSEMBL gene ids described in the vignette of DESeq2 package)?

Many thanks, Maria

annotation deseq2 • 89 views
ADD COMMENTlink modified 4 months ago by Martin Morgan ♦♦ 23k • written 4 months ago by mariagly0
Answer: How can I import KEGG annotations
0
gravatar for Martin Morgan
4 months ago by
Martin Morgan ♦♦ 23k
United States
Martin Morgan ♦♦ 23k wrote:

KEGGREST::keggGet() might be helpful.

ADD COMMENTlink written 4 months ago by Martin Morgan ♦♦ 23k
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