Question

Cannot down load the "org.Hs.eg.db" completely

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1650706262 • 0

@1650706262-21013

Last seen 4.9 years ago

I copied the Installation package to R (version "3.6") from the "Bioconductor" webside. However the R came up with warnings:

Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 331776 != reported length 2030028
2: In unzip(zipname, exdir = dest) 
3: In read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package", "Type")) :
  无法打开压缩文件'S4Vectors/DESCRIPTION'
> library("org.Hs.eg.db")
Error in library("org.Hs.eg.db")

software error probe • 1.1k views

ADD COMMENT • link updated 4.9 years ago by Martin Morgan 25k • written 4.9 years ago by 1650706262 • 0

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package ‘IRanges’ successfully unpacked and MD5 sums checked
Error in read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package", "Type"))

ADD REPLY • link updated 4.9 years ago by Martin Morgan 25k • written 4.9 years ago by 1650706262 • 0

Martin Morgan · Answer 1 · 2019-06-13

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Martin Morgan 25k

@martin-morgan-1513

Last seen 3 days ago

United States

Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 331776 != reported length 2030028

indicates that the download failed. Likely causes are an unreliable internet connection, disk full, or bad repository (hint for latter: don't set the option BioC_mirror).

ADD COMMENT • link 4.9 years ago Martin Morgan 25k

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thangks a lot. well, i tried to download the "org.Hs.eg.db" derectly from the website to intalled it, but there still has some problems:

> install.packages("C:/Users/李文轩/AppData/Local/Temp/RtmpqGa8bx/downloaded_packages/org.Hs.eg.db_3.8.2.tar.gz",repos=NULL, type="source")
Warning message:
In install.packages("C:/Users/李文轩/AppData/Local/Temp/RtmpqGa8bx/downloaded_packages/org.Hs.eg.db_3.8.2.tar.gz",  :
  安装程序包‘C:/Users/李文轩/AppData/Local/Temp/RtmpqGa8bx/downloaded_packages/org.Hs.eg.db_3.8.2.tar.gz’时退出狀態的值不是0

ADD REPLY • link updated 4.9 years ago by Martin Morgan 25k • written 4.9 years ago by 1650706262 • 0

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Please check disk space, both on the disk that the download file is located, and in the install location(s) indicated by .libPaths(). Is the library location (from .libPaths()) on a network share different from the temporary directory?

ADD REPLY • link 4.9 years ago Martin Morgan 25k