Question: snp ids download
0
gravatar for kamalesh.27.27.kamalesh
5 weeks ago by

I have been tryinng to download all snp ids for all genes present in NCBI for that i have used this code

library(biomaRt)

ensembl = useEnsembl(biomart="ensembl","snp", dataset="hsapiensgeneensembl","hsapiens_snp")

snps <- getBM(attributes=c('refsnpid','refsnpsource','hgncsymbol','chromosomename','startposition,'endposition'), filters = 'chromosome_name',values ="Y",mart = ensembl)

annotation • 53 views
ADD COMMENTlink written 5 weeks ago by kamalesh.27.27.kamalesh0
1

What happens when you try that code? Is there an error message? Does it work, but not give the expected results? You need to give a few more details here.

ADD REPLYlink written 5 weeks ago by Mike Smith3.8k
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