Hi All, I am trying to analyze methylation data from 3 different runs (a mix of 450K and 2 different versions of EPIC array) together. Even after using "force=TRUE" with read.metharray.exp() but getting the following error:
Error in read.metharray(basenames = files, extended = extended, verbose = verbose, : [read.metharray] Trying to parse different IDAT files, of different size and type. Calls: read.metharray.exp -> read.metharray Execution halted
Any help or clue will be highly appreciated. Thanks in advance.