Question: ChIPQC BiocParallel errors
0
gravatar for minervajunjun
6 weeks ago by
minervajunjun0 wrote:

Hi, I was running ChIPQC version ‘1.20.0’ under R version 3.6.0. I try to use ChIPQC() to construct an ChIPQCexperiment object, however it gives an error

"Calculating shift for chr1 300 / 300 Error: BiocParallel errors element index: 1, 2, 3, 4 first error: subscript contains out-of-bounds ranges"

any idea why was that? Thanks!

ADD COMMENTlink written 6 weeks ago by minervajunjun0

You might try to simplify this by making sure you use the SerialParam() back-end, which will cause local evaluation and allow you to debug the error interactively. I think you can do this with

BiocParallel::register(BiocParallel::SerialParam())

before executing your ChIPQD command.

ADD REPLYlink written 6 weeks ago by Martin Morgan ♦♦ 23k
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