Question: Using GoSemSim with other Ontologies
0
4 months ago by
helenlong10 wrote:

I would like to calculate Semantic similarity between pairs of genes in the mammalian phenotype ontology.

Is it possible to use the functions in this package with other ontologies.

Or does anyone know of any other packages which have this functionality.

Thank you!

gosemsim • 121 views
modified 4 months ago by Lluís Revilla Sancho530 • written 4 months ago by helenlong10
Answer: Using GoSemSim with other Ontologies
0
4 months ago by
European Union
Lluís Revilla Sancho530 wrote:

In principle it should, you should prepare the ontolgoy as described on the vignette with godataand the semantic similarities would work. However, make sure that the ontology follows the same structure than the gene ontology.