Question: Using GoSemSim with other Ontologies
0
gravatar for helenlong1
13 days ago by
helenlong10
helenlong10 wrote:

I would like to calculate Semantic similarity between pairs of genes in the mammalian phenotype ontology.

Is it possible to use the functions in this package with other ontologies.

Or does anyone know of any other packages which have this functionality.

Thank you!

gosemsim • 65 views
ADD COMMENTlink modified 12 days ago by Lluís Revilla Sancho500 • written 13 days ago by helenlong10
Answer: Using GoSemSim with other Ontologies
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gravatar for Lluís Revilla Sancho
12 days ago by
European Union
Lluís Revilla Sancho500 wrote:

In principle it should, you should prepare the ontolgoy as described on the vignette with godataand the semantic similarities would work. However, make sure that the ontology follows the same structure than the gene ontology.

ADD COMMENTlink written 12 days ago by Lluís Revilla Sancho500
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