Question: phyloseq package installation problem in RStudio
0
gravatar for thomazella16
5 weeks ago by
thomazella160 wrote:

I am trying to install the phyloseq package from Bioconductor in my RStudio, but always shows the error message "installation path not writable: boot". May someone give me some help with that?

I have used the following command to install the package in RStudio:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("phyloseq")

By the end, the error message is shown: "installation path not writable: boot"

Thank you all!

software error • 84 views
ADD COMMENTlink modified 4 weeks ago by Axel Klenk930 • written 5 weeks ago by thomazella160

This sounds like a warning and not an error. Can you load the package

library(phyloseq)

?

ADD REPLYlink written 5 weeks ago by Martin Morgan ♦♦ 23k
Answer: phyloseq package installation problem in RStudio
1
gravatar for Axel Klenk
4 weeks ago by
Axel Klenk930
Switzerland
Axel Klenk930 wrote:

This is not about 'phyloseq' but about package 'boot' that comes with R and, depending on your installation, may require admin permissions to update. Try running R with 'sudo' or 'as admin' or whatever necessary on your OS; you should be able to update package 'boot' and the message should disappear in ordinary R sessions...

ADD COMMENTlink written 4 weeks ago by Axel Klenk930
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