Choosing Gene ontology package
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na396 • 0
@na396-20786
Last seen 2.8 years ago

Hello I have a coexpression network, and I have found the clusters of the gene of it using two different methods. Now I want to compare these two methods with each other with respect to the gene ontology enrichment. Which package or application will you recommend me to use? Thank you

go annotation GOenrichment • 382 views
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@lluis-revilla-sancho
Last seen 1 day ago
European Union

You can use topGO package to compare the enrichment of these methods, or compare the similarity of the clusters using GOSemSim

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